Cinquin Lab

Publication List

Gene Expression Noise Enhances Robust Organization of the Early Mammalian Blastocyst

Holmes W., Reyes de Mochel S., Wang Q., Du H., Peng T., Chiang M., Cinquin O., Cho K., Nie Q. PLOS Comput Biol (2017)

Quantification of in vivo progenitor mutation accrual with ultra-low error rate and minimal input DNA using SIP-HAVA-seq

Taylor P.H., Cinquin A., Cinquin O. Genome Research (2016)

Intermittent Stem Cell Cycling Balances Self-Renewal and Senescence of the C. elegans Germ Line

Cinquin A., Chiang M., Paz A., Hallman S., Yuan O., Vysniauskaite I., Fowlkes C.C., Cinquin O. PLOS Genetics 12(4) (2016)

Semi-permeable diffusion barriers enhance patterning robustness in the C. elegans germ line.

Cinquin A., Zheng L., Taylor P.H., Paz A., Zhang L., Chiang M., Snow J.J., Nie Q., Cinquin O. Dev Cell 35(4) (2015)

Analysis of in vivo single cell behavior by high throughput, human-in-the-loop segmentation of three-dimensional images.

Chiang M., Hallman S., Cinquin A., Reyes de Mochel N., Paz A., Kawauchi S., Calof A.L., Cho K.W., Fowlkes C.C., Cinquin O. BMC Bioinformatics 16:397 (2015)

Control of Caenorhabditis elegans germ-line stem-cell cycling speed meets requirements of design to minimize mutation accumulation.

Chiang M., Cinquin A., Paz A., Meeds E., Price C.A., Welling M., Cinquin O. BMC Biology 13:51 (2015)

POPE: post optimization posterior evaluation of likelihood free models.

Meeds E., Chiang M., Lee M., Cinquin O., Lowengrub J., Welling M. BMC Bioinformatics 16:264 (2015)

BMP signaling is required for cell cleavage in preimplantation-mouse embryos.

Reyes de Mochel N.S., Luong M., Chiang M., Javier A.L., Luu E., Toshihiko F., MacGregor G.R., Cinquin O., Cho K. Dev. Biol. 397(1), pp45-55 (2015)

Live imaging reveals active infiltration of mitotic zone by its stem cell niche.

Wong B.G.‡, Paz A.‡, Corrado M.A., Ramos B.R., Cinquin A., Cinquin O.*, Hui E.E.* Integrative Biology 5(7), pp976-982 (2013)

Phasor approach to fluorescence lifetime microscopy distinguishes different metabolic states of germ cells in a live tissue.

Stringari C., Cinquin A., Cinquin O., Digman M.A., Donovan P.J., Gratton E. PNAS 108(33), pp13582-7 (2011)

Progression from a stem cell–like state to early differentiation in the C. elegans germ line.

Cinquin O‡*, Crittenden S.L.‡, Morgan D.E., Kimble J*. PNAS 107(5), pp2048-53 (2010)


Purpose and regulation of stem cells: a systems-biology view from the C. elegans germ line.

Cinquin O. J. Pathol. 217, pp186-198 (2009)


Understanding the somitogenesis clock: what’s missing?

Cinquin O. Mech. Dev. 124(7-8), pp501-517 (2007)


A new method to transfect the hypoblast of the chick embryo reveals conservation of the regulation of an Otx2 enhancer between mouse and chick extraembryonic endoderm.

Albazerchi A., Cinquin O., Stern C.D. BMC Dev. Biol. 7:25 (2007)


Repressor dimerization in the zebrafish somitogenesis clock

Cinquin O. PLoS Computational Biology 3(2) e32 (2007)


Generalized, switch-like competitive heterodimerization networks

Cinquin O., Page K.M. Bull. Math. Biol. 69(2), pp483-494 (2007)


Fast-tracking morphogen diffusion

Cinquin O., J. Theor. Biol. 238(3), pp532-540 (2006)


High-dimensional switches and the modeling of cellular differentiation

Cinquin O., Demongeot J., J. Theor. Biol. 233(3), pp391-411 (2005)


Cloning and Expression of Malarial Pyrimidine Enzymes

Christopherson R.I., Cinquin O., Shojaei M., Kuehn D., Menz R.I., Nucleos. Nucleot. Nucl. 23(8-9), pp1459-1465 (2004)


Is the somitogenesis clock really cell-autonomous? A coupled-oscillator model of segmentation

Cinquin O., J. Theor. Biol. 222(4), pp459-468 (2003)


Roles of positive and negative feedback in biological systems,

Cinquin O., Demongeot J., C.R. Biol. 325(11), pp1085-1095 (2002)


Positive and negative feedback: striking a balance between necessary antagonists

Cinquin O., Demongeot J., J. Theor. Biol. 216(2), pp229-241 (2002)


Identification, cloning and functional expression of the gene encoding OMP decarboxylase from Plasmodium falciparum

Menz R.I., Cinquin O., Christopherson R.I. Ann. Trop. Med. Parasitol. 96(5), pp469-476 (2002)


A hybrid plasmid for expression of toxic malarial proteins in Escherichia coli

Cinquin O., Christopherson R.I., Menz R.I., Mol. Biochem. Parasitol. 117(2), pp245-247 (2001)


Mémoire de Maîtrise de Mathématiques: Quelques résultats globaux sur les variétés (in French)


Ada generic package implementing the Runge-Kutta algorithm, with BLAS optimisation